tree-wide: Update to new libglnx fd APIs
This ends up a lot better IMO. This commit is *mostly* just
`s/glnx_close_fd/glnx_autofd`, but there's also a number of hunks like:
```
- if (self->sysroot_fd != -1)
- {
- (void) close (self->sysroot_fd);
- self->sysroot_fd = -1;
- }
+ glnx_close_fd (&self->sysroot_fd);
```
Update submodule: libglnx
Closes: #1259
Approved by: jlebon
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Submodule libglnx updated: e30154431d...5362f6bc3f.
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